PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00016051-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 560aa    MW: 60950.8 Da    PI: 6.5125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00016051-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28e-10364411455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  WALNUT_00016051-RA 364 SHSLAERVRREKISERMKLLQDLVPGC----NKITGKALMLDEIINYVQSLQ 411
                         8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-17358430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-10358415No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16360428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-7364411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-10366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MENEFFLNAG VPLSLHFESS ASMPMWHSLS SAMEIQGTEV NCLSEQSQDC FLNPNWEKSA  60
DHGVHFDSAL SSMVSSPAAS NTNLSNDSFV IRELIGKLGN IGNSGDISPH SQPLLASYIG  120
GNTSANTSCY STPLNSPPKL NVPRMDHLVK ENLPSLGKSM PLNSSVADFS ADPGFAERAA  180
RFSRFGSKSF NDRTSQFGIK NTDVSCRSYL PMDTEGLPRV SSSPSLNALG SQMGAQENNI  240
SPLQDRTELA NSQEESTVSE QIPKGETGLK GSNDVNSRKR KTASKGKAKE ATKAEEANDK  300
SNAKRCKTTE ANGNENGPVK AEEETKGSTR CAGDEKQSKS STKPPEPPKD YIHVRARRGQ  360
ATDSHSLAER VRREKISERM KLLQDLVPGC NKITGKALML DEIINYVQSL QRQVEFLSMK  420
LASVNTRMDF NMDSLMISKD IFRSNNPSPH AIFPLDSSAS AFYGHHPQQN PALHTNVSNG  480
TATQCPVDPL NTAPCQSLGV QLPPLNGYSE SVSQYPMYGE DDLQTIVQMG FGQNTNGETA  540
ILQPRRFHVS DQATHAKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281SRKRKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892293.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A061DLW80.0A0A061DLW8_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGPOPTR_0002s24990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-118bHLH family protein